I don’t know if there are any user-visible side effects, but the phone does knows the difference between official and unofficial batteries. Here’s a photo I took of my iPhone 7 showing the internal battery stats immediately after an official replacement during the discount program a couple years ago: https://i.imgur.com/Wo5fSFj.jpg
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Which app did you use to retrieve the detailed internal battery stats in the photo?
The one pictured was a jailbreak tweak called DetailedPowerUsage: https://legitcomputerwhisperer.github.io/depic/InternalBatte...
DPU hasn't been updated for compatibility with iOS 12+, but another tweak "System Info" can show some of the same info: https://old.reddit.com/r/jailbreak/comments/8ecxdm/update_sy...
Thanks. I am not looking to jailbreak yet, so I will have to forgo acquiring these stats for now. I have Lirium Lite, which also does not show the internal stats past iOS 10, due to restricted API.