I'm honestly surprised there is this much music with this license. To download 10k means there's an even larger pool of music available. I know the royalty free music is becoming more wide spread for all of those youtubers, but I would not have thought it to be this big.
You can certainly find some gems if you are willing to dig.
I presume what is happening is that the drums all have slight variants in timings, and PCA is not phase insensitive, so sees them as totally different.
I wonder if you'd get better results if you downsampled even more agressively, or did some more sophisticated feature transformation.
Also, what about doing inverse transforms to try to hallucinate music?
More than the sum of its parts (emergent) is to be reduced to its principal components.