I sympathise with your point about the benefits of Nihon-shiki romanization here. It might’ve been a better choice for this article.
> I cannot wrap my head around how this line in the article could be defensible
I think the reader would just read the next section where I use your argument to critique my own approach? And then make up their own mind whether it’s defensible to do something in the article, to raise pros/cons for why I did it, and then to keep on with the choice.
I wanted to illustrate this confusing point, and that’s how I chose to illustrate it. I think it’s confusing either way. I trust that a reader who actually wants to learn, and isn’t just being a pedant, would carry away the right set of conclusions, and would understand the isomorphism (again — see EDIT below) after those two sections.
> Like, if I don’t understand how Japanese is pronounced or written, and I just rely on Hepburn, I guess pasting these fragments of Hepburn together don’t produce the right Hepburn in the end?
Yeah. So that’s a learning opportunity that kana row shifting doesn’t quite follow rules you might expect from many other languages. Maybe that’s a clunky way to introduce it. I personally like this framing. As I noted somewhere else, you could imagine that I’ve chosen IPA notation instead.
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EDIT: Actually wait, Hepburn is not bijective for zu and ji. I haven’t thought about that. It’s not relevant to any of the conjugations so it doesn’t break the article, but that may be a good argument that it’s not worth the effort rescuing Hepburn.