Security is just one of my concerns. I'm actually more worried about borking my system because it's doing some out of band stuff with various javascript pieces that already exist on my system (not by my choice!).
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I write command line tools primarily with Python and one thing I always try to do is to limit myself to the standard library, which, with Python, is quite sufficient for most of what I do.
Anyway, most of what I write is designed to be installed in a virtualenv, which restricts the blast radius to one specific application.