Now, if you want to take a deeper interpretation of the analogy of "clone", as in duplicate DNA, then Linux is less of a clone of "Unix" than BSD, since it was independently written, and a judge has pretty much declared that it contains no copyrighted content that originated with "Unix". Read the SCO travesty timeline at groklaw.com. Meanwhile, the Berkeley (Berkeley Standard Distribution - BSD) folks actually worked from a copy of the original Bell Labs Unix - but worked so hard on it that in a much earlier court case, a judge made a (sealed) declaration that BSD had only a handful of lines left from the original code, and that Berkeley could distribute their work, with the exception of that handful, on their own terms. Berkeley quickly replaced/removed any infringing content, and that became the basis for the *BSDs.
For the glorious history of Unix, read Peter Salus's "A Quarter Century of Unix".
FTFY
Being "UNIX" is about passing tests and paying money. Being "Unix" is about the ancestry of the code and the design philosophy. Being "a Unix clone" happens where the ancestry of the code diverges.
That's the way most of us who know something about the subject use the terms. If it is actually an exact duplicate of the original code, we tend to call that a "copy" -- not a "clone". For instance, "I have a copy of AT&T Unix at home."